stdpopsim
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Contents:
Introduction
Installation
Catalog
Tutorials
Command-line options
API
Development
Changelogs
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Welcome to stdpopsim’s documentation!
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Welcome to stdpopsim’s documentation!
¶
Contents:
Introduction
First steps
Getting involved
Citations
Licence and usage
Installation
Requirements
Conda
Pip
Running the CLI
Catalog
Arabidopsis thaliana
Canis familiaris
Drosophila melanogaster
Escherichia coli
Homo sapiens
Pongo abelii
Generic models
Tutorials
Running
stdpopsim
with the command-line interface (CLI)
Running stdpopsim with the Python interface (API)
Example analyses with
stdpopsim
Command-line options
Positional Arguments
Named Arguments
msprime specific parameters
SLiM specific parameters
Sub-commands:
API
Species definitions
Demographic Models
Generic models
Simulation Engines
Development
Installation
GitHub workflow
Adding a new demographic model
Adding a new species
Adding a genetic map
Coding standards
Naming conventions
Unit tests
Documentation
Changelogs
[0.1.2] - 2020-05-29
[0.1.1] - 2020-01-02
[0.1.0] - 2019-12-18
Indices and tables
¶
Index
Module Index
Search Page
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